From 8aa4b4b142f924cb330d014fe1a673f398495396 Mon Sep 17 00:00:00 2001 From: dylanbenzi Date: Fri, 26 Dec 2025 19:15:50 -0500 Subject: [PATCH] update renv --- renv.lock | 345 ++++++++++++++++++++++++++++++++++++++++++++++++------ 1 file changed, 309 insertions(+), 36 deletions(-) diff --git a/renv.lock b/renv.lock index ee39a54..2b4c617 100644 --- a/renv.lock +++ b/renv.lock @@ -2231,6 +2231,93 @@ "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, + "ggrepel": { + "Package": "ggrepel", + "Version": "0.9.6", + "Source": "Repository", + "Authors@R": "c( person(\"Kamil\", \"Slowikowski\", email = \"kslowikowski@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Alicia\", \"Schep\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3915-0618\")), person(\"Sean\", \"Hughes\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9409-9405\")), person(\"Trung Kien\", \"Dang\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7562-6495\")), person(\"Saulius\", \"Lukauskas\", role = \"ctb\"), person(\"Jean-Olivier\", \"Irisson\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4920-3880\")), person(\"Zhian N\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(\"Thompson\", \"Ryan\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0450-8181\")), person(\"Dervieux\", \"Christophe\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Yutani\", \"Hiroaki\", role = \"ctb\"), person(\"Pierre\", \"Gramme\", role = \"ctb\"), person(\"Amir Masoud\", \"Abdol\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Robrecht\", \"Cannoodt\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3641-729X\")), person(\"Michał\", \"Krassowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9638-7785\")), person(\"Michael\", \"Chirico\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Pedro\", \"Aphalo\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Francis\", \"Barton\", role = \"ctb\") )", + "Title": "Automatically Position Non-Overlapping Text Labels with 'ggplot2'", + "Description": "Provides text and label geoms for 'ggplot2' that help to avoid overlapping text labels. Labels repel away from each other and away from the data points.", + "Depends": [ + "R (>= 3.0.0)", + "ggplot2 (>= 2.2.0)" + ], + "Imports": [ + "grid", + "Rcpp", + "rlang (>= 0.3.0)", + "scales (>= 0.5.0)", + "withr (>= 2.5.0)" + ], + "Suggests": [ + "knitr", + "rmarkdown", + "testthat", + "svglite", + "vdiffr", + "gridExtra", + "ggpp", + "patchwork", + "devtools", + "prettydoc", + "ggbeeswarm", + "dplyr", + "magrittr", + "readr", + "stringr" + ], + "VignetteBuilder": "knitr", + "License": "GPL-3 | file LICENSE", + "URL": "https://ggrepel.slowkow.com/, https://github.com/slowkow/ggrepel", + "BugReports": "https://github.com/slowkow/ggrepel/issues", + "RoxygenNote": "7.3.1", + "LinkingTo": [ + "Rcpp" + ], + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Kamil Slowikowski [aut, cre] (), Alicia Schep [ctb] (), Sean Hughes [ctb] (), Trung Kien Dang [ctb] (), Saulius Lukauskas [ctb], Jean-Olivier Irisson [ctb] (), Zhian N Kamvar [ctb] (), Thompson Ryan [ctb] (), Dervieux Christophe [ctb] (), Yutani Hiroaki [ctb], Pierre Gramme [ctb], Amir Masoud Abdol [ctb], Malcolm Barrett [ctb] (), Robrecht Cannoodt [ctb] (), Michał Krassowski [ctb] (), Michael Chirico [ctb] (), Pedro Aphalo [ctb] (), Francis Barton [ctb]", + "Maintainer": "Kamil Slowikowski ", + "Repository": "CRAN" + }, + "ggtext": { + "Package": "ggtext", + "Version": "0.1.2", + "Source": "Repository", + "Type": "Package", + "Title": "Improved Text Rendering Support for 'ggplot2'", + "Authors@R": "c( person( given = \"Claus O.\", family = \"Wilke\", role = c(\"aut\"), email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\") ), person( given = \"Brenton M.\", family = \"Wiernik\", role = c(\"aut\", \"cre\"), email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\", Twitter = \"@bmwiernik\") ) )", + "Description": "A 'ggplot2' extension that enables the rendering of complex formatted plot labels (titles, subtitles, facet labels, axis labels, etc.). Text boxes with automatic word wrap are also supported.", + "URL": "https://wilkelab.org/ggtext/", + "BugReports": "https://github.com/wilkelab/ggtext/issues", + "License": "GPL-2", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ + "ggplot2 (>= 3.3.0)", + "grid", + "gridtext", + "rlang", + "scales" + ], + "Suggests": [ + "cowplot", + "dplyr", + "glue", + "knitr", + "rmarkdown", + "testthat", + "vdiffr" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.1.1", + "VignetteBuilder": "knitr", + "NeedsCompilation": "no", + "Author": "Claus O. Wilke [aut] (), Brenton M. Wiernik [aut, cre] (, @bmwiernik)", + "Maintainer": "Brenton M. Wiernik ", + "Repository": "CRAN" + }, "globals": { "Package": "globals", "Version": "0.18.0", @@ -2448,6 +2535,50 @@ "Maintainer": "Baptiste Auguie ", "Repository": "CRAN" }, + "gridtext": { + "Package": "gridtext", + "Version": "0.1.5", + "Source": "Repository", + "Type": "Package", + "Title": "Improved Text Rendering Support for 'Grid' Graphics", + "Authors@R": "c( person( given = \"Claus O.\", family = \"Wilke\", role = c(\"aut\"), email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\") ), person( given = \"Brenton M.\", family = \"Wiernik\", role = c(\"aut\", \"cre\"), email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\", Twitter = \"@bmwiernik\") ) )", + "Description": "Provides support for rendering of formatted text using 'grid' graphics. Text can be formatted via a minimal subset of 'Markdown', 'HTML', and inline 'CSS' directives, and it can be rendered both with and without word wrap.", + "URL": "https://wilkelab.org/gridtext/", + "BugReports": "https://github.com/wilkelab/gridtext/issues", + "License": "MIT + file LICENSE", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ + "curl", + "grid", + "grDevices", + "markdown", + "rlang", + "Rcpp", + "png", + "jpeg", + "stringr", + "xml2" + ], + "Suggests": [ + "covr", + "knitr", + "rmarkdown", + "testthat", + "vdiffr" + ], + "LinkingTo": [ + "Rcpp" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.1.1", + "SystemRequirements": "C++11", + "NeedsCompilation": "yes", + "Author": "Claus O. Wilke [aut] (), Brenton M. Wiernik [aut, cre] (, @bmwiernik)", + "Maintainer": "Brenton M. Wiernik ", + "Repository": "CRAN" + }, "gtable": { "Package": "gtable", "Version": "0.3.6", @@ -2923,6 +3054,25 @@ "Maintainer": "Folashade Daniel ", "Repository": "CRAN" }, + "jpeg": { + "Package": "jpeg", + "Version": "0.1-11", + "Source": "Repository", + "Title": "Read and write JPEG images", + "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, )", + "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.org\", ORCID=\"0000-0003-2297-1732\"))", + "Maintainer": "Simon Urbanek ", + "Depends": [ + "R (>= 2.9.0)" + ], + "Description": "This package provides an easy and simple way to read, write and display bitmap images stored in the JPEG format. It can read and write both files and in-memory raw vectors.", + "License": "GPL-2 | GPL-3", + "SystemRequirements": "libjpeg", + "URL": "https://www.rforge.net/jpeg/", + "BugReports": "https://github.com/s-u/jpeg/issues", + "NeedsCompilation": "yes", + "Repository": "CRAN" + }, "jquerylib": { "Package": "jquerylib", "Version": "0.1.4", @@ -3423,6 +3573,38 @@ "Maintainer": "Henrik Bengtsson ", "Repository": "CRAN" }, + "litedown": { + "Package": "litedown", + "Version": "0.9", + "Source": "Repository", + "Type": "Package", + "Title": "A Lightweight Version of R Markdown", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Tim\", \"Taylor\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8587-7113\")), person() )", + "Description": "Render R Markdown to Markdown (without using 'knitr'), and Markdown to lightweight HTML or 'LaTeX' documents with the 'commonmark' package (instead of 'Pandoc'). Some missing Markdown features in 'commonmark' are also supported, such as raw HTML or 'LaTeX' blocks, 'LaTeX' math, superscripts, subscripts, footnotes, element attributes, and appendices, but not all 'Pandoc' Markdown features are (or will be) supported. With additional JavaScript and CSS, you can also create HTML slides and articles. This package can be viewed as a trimmed-down version of R Markdown and 'knitr'. It does not aim at rich Markdown features or a large variety of output formats (the primary formats are HTML and 'LaTeX'). Book and website projects of multiple input documents are also supported.", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ + "utils", + "commonmark (>= 2.0.0)", + "xfun (>= 0.55)" + ], + "Suggests": [ + "rbibutils", + "rstudioapi", + "tinytex" + ], + "License": "MIT + file LICENSE", + "URL": "https://github.com/yihui/litedown", + "BugReports": "https://github.com/yihui/litedown/issues", + "VignetteBuilder": "litedown", + "RoxygenNote": "7.3.3", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (ORCID: , URL: https://yihui.org), Tim Taylor [ctb] (ORCID: )", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" + }, "lubridate": { "Package": "lubridate", "Version": "1.9.4", @@ -3500,6 +3682,38 @@ "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, + "markdown": { + "Package": "markdown", + "Version": "2.0", + "Source": "Repository", + "Type": "Package", + "Title": "Render Markdown with 'commonmark'", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"JJ\", \"Allaire\", role = \"aut\"), person(\"Jeffrey\", \"Horner\", role = \"aut\"), person(\"Henrik\", \"Bengtsson\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Yixuan\", \"Qiu\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Adam\", \"November\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Thomas\", \"Leeper\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Andrzej\", \"Oles\", role = \"ctb\"), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Render Markdown to full and lightweight HTML/LaTeX documents with the 'commonmark' package. This package has been superseded by 'litedown'.", + "Depends": [ + "R (>= 2.11.1)" + ], + "Imports": [ + "utils", + "xfun", + "litedown (>= 0.6)" + ], + "Suggests": [ + "knitr", + "rmarkdown (>= 2.18)", + "yaml", + "RCurl" + ], + "License": "MIT + file LICENSE", + "URL": "https://github.com/rstudio/markdown", + "BugReports": "https://github.com/rstudio/markdown/issues", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (), JJ Allaire [aut], Jeffrey Horner [aut], Henrik Bengtsson [ctb], Jim Hester [ctb], Yixuan Qiu [ctb], Kohske Takahashi [ctb], Adam November [ctb], Nacho Caballero [ctb], Jeroen Ooms [ctb], Thomas Leeper [ctb], Joe Cheng [ctb], Andrzej Oles [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" + }, "memoise": { "Package": "memoise", "Version": "2.0.1", @@ -3848,6 +4062,50 @@ "Maintainer": "Henrik Bengtsson ", "Repository": "CRAN" }, + "patchwork": { + "Package": "patchwork", + "Version": "1.3.2", + "Source": "Repository", + "Type": "Package", + "Title": "The Composer of Plots", + "Authors@R": "person(given = \"Thomas Lin\", family = \"Pedersen\", role = c(\"cre\", \"aut\"), email = \"thomasp85@gmail.com\", comment = c(ORCID = \"0000-0002-5147-4711\"))", + "Maintainer": "Thomas Lin Pedersen ", + "Description": "The 'ggplot2' package provides a strong API for sequentially building up a plot, but does not concern itself with composition of multiple plots. 'patchwork' is a package that expands the API to allow for arbitrarily complex composition of plots by, among others, providing mathematical operators for combining multiple plots. Other packages that try to address this need (but with a different approach) are 'gridExtra' and 'cowplot'.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "Imports": [ + "ggplot2 (>= 3.0.0)", + "gtable (>= 0.3.6)", + "grid", + "stats", + "grDevices", + "utils", + "graphics", + "rlang (>= 1.0.0)", + "cli", + "farver" + ], + "RoxygenNote": "7.3.2", + "URL": "https://patchwork.data-imaginist.com, https://github.com/thomasp85/patchwork", + "BugReports": "https://github.com/thomasp85/patchwork/issues", + "Suggests": [ + "knitr", + "rmarkdown", + "gridGraphics", + "gridExtra", + "ragg", + "testthat (>= 2.1.0)", + "vdiffr", + "covr", + "png", + "gt (>= 0.11.0)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "gifski", + "NeedsCompilation": "no", + "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: )", + "Repository": "CRAN" + }, "pillar": { "Package": "pillar", "Version": "1.11.1", @@ -4217,41 +4475,6 @@ "Author": "Thomas A. Gerds [aut, cre]", "Repository": "CRAN" }, - "profvis": { - "Package": "profvis", - "Version": "0.4.0", - "Source": "Repository", - "Title": "Interactive Visualizations for Profiling R Code", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Javier\", \"Luraschi\", role = \"aut\"), person(\"Timothy\", \"Mastny\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library\"), person(, \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/htmlwidgets/lib/jquery/AUTHORS.txt\"), person(\"Mike\", \"Bostock\", role = c(\"ctb\", \"cph\"), comment = \"D3 library\"), person(, \"D3 contributors\", role = \"ctb\", comment = \"D3 library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\") )", - "Description": "Interactive visualizations for profiling R code.", - "License": "MIT + file LICENSE", - "URL": "https://profvis.r-lib.org, https://github.com/r-lib/profvis", - "BugReports": "https://github.com/r-lib/profvis/issues", - "Depends": [ - "R (>= 4.0)" - ], - "Imports": [ - "htmlwidgets (>= 0.3.2)", - "rlang (>= 1.1.0)", - "vctrs" - ], - "Suggests": [ - "htmltools", - "knitr", - "rmarkdown", - "shiny", - "testthat (>= 3.0.0)" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate, rmarkdown", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre], Winston Chang [aut], Javier Luraschi [aut], Timothy Mastny [aut], Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/htmlwidgets/lib/jquery/AUTHORS.txt), Mike Bostock [ctb, cph] (D3 library), D3 contributors [ctb] (D3 library), Ivan Sagalaev [ctb, cph] (highlight.js library)", - "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" - }, "progress": { "Package": "progress", "Version": "1.2.3", @@ -5063,6 +5286,55 @@ "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, + "rnaturalearth": { + "Package": "rnaturalearth", + "Version": "1.1.0", + "Source": "Repository", + "Title": "World Map Data from Natural Earth", + "Authors@R": "c( person( family = \"Massicotte\", given = \"Philippe\", email = \"pmassicotte@hotmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5919-4116\") ), person( family = \"South\", given = \"Andy\", email = \"southandy@gmail.com\", role = c(\"aut\") ), person( family = \"Hufkens\", given = \"Koen\", email = \"koen.hufkens@gmail.com\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-5070-8109\") ))", + "Description": "Facilitates mapping by making natural earth map data from more easily available to R users.", + "License": "MIT + file LICENSE", + "LazyData": "true", + "LazyDataCompression": "xz", + "Encoding": "UTF-8", + "URL": "https://docs.ropensci.org/rnaturalearth/, https://github.com/ropensci/rnaturalearth, https://docs.ropensci.org/rnaturalearthhires/", + "BugReports": "https://github.com/ropensci/rnaturalearth/issues", + "Additional_repositories": "http://packages.ropensci.org", + "Depends": [ + "R (>= 3.1.1)" + ], + "Imports": [ + "cli", + "httr (>= 1.1.0)", + "jsonlite", + "sf (>= 0.3-4)", + "terra", + "utils (>= 3.2.3)" + ], + "Suggests": [ + "devtools (>= 1.10.0)", + "dplyr", + "ggplot2", + "ggrepel", + "knitr (>= 1.12.3)", + "lifecycle (>= 1.0.3)", + "pbapply", + "purrr", + "rlang", + "rmarkdown", + "rnaturalearthdata (>= 1.0.0)", + "rnaturalearthhires (>= 1.0.0)", + "testthat (>= 0.9.1)", + "tmap" + ], + "Config/Needs/website": "ropensci/rnaturalearthhires", + "VignetteBuilder": "knitr", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Philippe Massicotte [aut, cre] (ORCID: ), Andy South [aut], Koen Hufkens [ctb] (ORCID: )", + "Maintainer": "Philippe Massicotte ", + "Repository": "CRAN" + }, "rpart": { "Package": "rpart", "Version": "4.1.24", @@ -6714,7 +6986,7 @@ }, "xfun": { "Package": "xfun", - "Version": "0.54", + "Version": "0.55", "Source": "Repository", "Type": "Package", "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'", @@ -6747,6 +7019,7 @@ "magick", "yaml", "data.table", + "qs2", "qs" ], "License": "MIT + file LICENSE",